Abiogenesis (Origins)

by George Jelliss ⌂ @, Crewe, Wednesday, August 19, 2009, 12:52 (5385 days ago)

The latest on abiogenesis - Glycine found in comets
http://www.reuters.com/article/scienceNews/idUSTRE57H02I20090818?feedType=RSS&feedName=scienceNews
http://www.sciencedaily.com/releases/2009/08/090817143602.htm - Nucleobases found in meteorites
http://www.eurekalert.org/pub_releases/2008-06/icl-sct061308.php - Video by cdkoo7 on abiogenesis according to Prof. Szostak
http://www.youtube.com/watch?v=U6QYDdgP9eg - The above video explains the essentials very clearly. - Interview with Jack Szostak
http://www.youtube.com/watch?v=3OwSARYTK7w - Lies ... and probability of abiogenesis
http://www.talkorigins.org/faqs/abioprob/abioprob.html - The above is about why the enormous improbabilities calculated by creationists / intelligent desighners are nonsense.

--
GPJ

Abiogenesis

by David Turell @, Thursday, August 20, 2009, 22:28 (5383 days ago) @ George Jelliss

The latest on abiogenesis
> 
> Glycine found in comets
> http://www.reuters.com/article/scienceNews/idUSTRE57H02I20090818?feedType=RSS&feedN... http://www.sciencedaily.com/releases/2009/08/090817143602.htm - Gyycine is a simple amino acid, only one of 20 essential for life. Only eight of these amino acids have been found in space or on meteorites. 
> Nucleobases found in meteorites
> http://www.eurekalert.org/pub_releases/2008-06/icl-sct061308.php - Same comment applies in this sense. Nucleobases are only a small but integral part of DNA/RNA. One part does not make the whole.Of course there are organic compounds in space, but only a small percentage of what is needed to make even the smallest self-replicating RNA, when the origin-of-life process even gets to that stage.
 
> 
> Lies ... and probability of abiogenesis
> http://www.talkorigins.org/faqs/abioprob/abioprob.html
> 
> The above is about why the enormous improbabilities calculated by creationists / intelligent desighners are nonsense. - The above carefully ignores the enormous series of contingent steps to get to life and the enormous odds against each step. I am not jumping to the living cell, de novo. Each step requires many factors and the enormous odds that necessary feed stocks are adjacent to each other. Faith in abiogenesis is pure faith, and only that. Please avoid the word 'nonsense', or I will start to find other nasty words for your faith.

Abiogenesis

by dhw, Friday, August 21, 2009, 13:24 (5383 days ago) @ George Jelliss

First of all I'd like to thank both George and David for constantly updating us with interesting articles and the latest research. - I've only had time so far to read the "Lies, Damned Lies..." article. David has given us a scientific response, but I must confess the warning signals were already beginning to flash when I read such statements as: "[...] in modern abiogenesis theories the first "living things" would be much simpler [...] one or more simple molecules probably not more than 30-40 subunits long. These simple molecules then slowly evolved into more cooperative self-replicating systems." Simple, simple, simple. If it's so simple, how come we're still struggling to fathom it all out? - "Where the creationist idea that modern organisms form spontaneously comes from is not certain. [...] Even the ideas circulating in the 1850's were not "spontaneous" theories." The word "spontaneous" always seems to raise the hackles. But the word means: "resulting from internal or natural processes with no apparent external influences". Isn't that precisely what abiogenists are hoping to prove? Perhaps the problem lies in the fact that the word is associated with chance, and the idea that the theory of abiogenesis demands faith in chance is anathema to such writers. - But it's the conclusion that puts the whole argument in perspective, with phrases such as: 
"At the moment, since we have no idea how probable life is, it's virtually impossible to assign any meaningful probabilities to any of the steps of life except the first two."
 
"...but this requires real chemistry and more detailed modelling to confirm." - "...the probability here is dependent on theoretical concepts still being developed, and is unknown." - "However, in the end life's feasibility depends on chemistry and biochemistry that we are still studying." - So now we know...what exactly?

Abiogenesis

by xeno6696 @, Sonoran Desert, Tuesday, August 25, 2009, 03:55 (5379 days ago) @ dhw

dhw, - > First of all I'd like to thank both George and David for constantly updating us with interesting articles and the latest research.
> 
> I've only had time so far to read the "Lies, Damned Lies..." article. David has given us a scientific response, but I must confess the warning signals were already beginning to flash when I read such statements as: "[...] in modern abiogenesis theories the first "living things" would be much simpler [...] one or more simple molecules probably not more than 30-40 subunits long. These simple molecules then slowly evolved into more cooperative self-replicating systems." Simple, simple, simple. If it's so simple, how come we're still struggling to fathom it all out? 
> 
> "Where the creationist idea that modern organisms form spontaneously comes from is not certain. [...] Even the ideas circulating in the 1850's were not "spontaneous" theories." The word "spontaneous" always seems to raise the hackles. But the word means: "resulting from internal or natural processes with no apparent external influences". Isn't that precisely what abiogenists are hoping to prove? Perhaps the problem lies in the fact that the word is associated with chance, and the idea that the theory of abiogenesis demands faith in chance is anathema to such writers. 
> - I think the "spontaneous" they refer to is the remnant of "Spontaneous Generation" which was the prevailing theory before Darwin. - > But it's the conclusion that puts the whole argument in perspective, with phrases such as: 
> "At the moment, since we have no idea how probable life is, it's virtually impossible to assign any meaningful probabilities to any of the steps of life except the first two."
> 
> "...but this requires real chemistry and more detailed modelling to confirm." 
> 
> "...the probability here is dependent on theoretical concepts still being developed, and is unknown." 
> 
> "However, in the end life's feasibility depends on chemistry and biochemistry that we are still studying." 
> 
> So now we know...what exactly? - We know we need to know more, lol.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Abiogenesis

by xeno6696 @, Sonoran Desert, Tuesday, August 25, 2009, 04:03 (5379 days ago) @ George Jelliss

George, - > The latest on abiogenesis
> 
> Glycine found in comets
> http://www.reuters.com/article/scienceNews/idUSTRE57H02I20090818?feedType=RSS&feedN... http://www.sciencedaily.com/releases/2009/08/090817143602.htm
> 
> Nucleobases found in meteorites
> http://www.eurekalert.org/pub_releases/2008-06/icl-sct061308.php
> 
> Video by cdkoo7 on abiogenesis according to Prof. Szostak
> http://www.youtube.com/watch?v=U6QYDdgP9eg
> 
> The above video explains the essentials very clearly.
> 
> Interview with Jack Szostak
> http://www.youtube.com/watch?v=3OwSARYTK7w
> 
> Lies ... and probability of abiogenesis
> http://www.talkorigins.org/faqs/abioprob/abioprob.html
> 
> The above is about why the enormous improbabilities calculated by creationists / intelligent desighners are nonsense. - As much of a fan of abiogenesis as I am, at this point the detractors have an upper hand purely in terms that we simply don't have enough evidence yet. (I'm speaking strictly logically, as if it was a court case.) Though for some people (Turell) creating a chain of reactions that would result in life wouldn't nullify a creator, it would necessarily mean that one would not need to be invoked. - I have faith in science, but my time in biochem and computer labs make me a helluva lot more cautious than it would be to say we've solved the problem. We have tantalizing clues, and to me Turell's pointing out that only 8 amino acids of 20 were present brings a whole host of needed explanations. I agree with you that we don't need to invoke a deity, but neither will I accept that we have a good enough scientific explanation at this juncture.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Abiogenesis

by George Jelliss ⌂ @, Crewe, Thursday, September 03, 2009, 21:25 (5369 days ago) @ George Jelliss

Have I posted this one before?-http://www.sciencedaily.com/releases/2009/08/090829091049.htm-It's about how the DNA code could evolve.

--
GPJ

Abiogenesis

by David Turell @, Friday, September 04, 2009, 15:48 (5368 days ago) @ George Jelliss

Have I posted this one before?
> 
> http://www.sciencedaily.com/releases/2009/08/090829091049.htm-
I don't think you posted the article but I had seen it before, and analyzed it as the usual needed experimentation involving, of course, much human manipulation to get a necessary result to fit the theory, showing how the odds against this theory are so high. On the other hand here is a new approach:- http://www.physorg.com/news171263002.html

Abiogenesis

by dhw, Saturday, September 05, 2009, 11:50 (5368 days ago) @ George Jelliss

George has referred us to another article detailing research into abiogenesis.-Once again, many thanks for this reference. No doubt science will gradually come closer and closer to understanding how life began, but as usual the conclusion puts things in perspective:- Although Libchaber and Lehmann point out that the analysis certainly does 
 not provide a full picture of the problem, the work nonetheless brings us 
 one step closer to understanding how life first began. "The dream of 
 physicists is to create elementary life," Libchaber says. "Then we would 
 know that we understand something."-The problem for someone uncommitted like myself is that the more difficult these intelligent scientists find it to understand the code (and to fulfil their dream), the more difficult it is for me to believe that it could come into being by sheer chance in the first place. However, we've been over this point a hundred times, and I remain very grateful to you and David for continuing to update us. -Thank you also for pointing out the websites on brain research. I'll look into these in the next day or so.

Abiogenesis

by David Turell @, Saturday, September 05, 2009, 16:36 (5367 days ago) @ dhw

The problem for someone uncommitted like myself is that the more difficult these intelligent scientists find it to understand the code (and to fulfil their dream), -The problem is not the code itself. We now understand large parts of it and the new discoveries about RNA show more layers of code than were originially thought to be present. Also the new field of epigenetics would be an old field if the rigidity of Darwinism allowed Paul Kammerer's work to be critically reviewed and accepted in the 1920's.- http://www.medicalnewstoday.com/articles/162880.php-The real problem is the starting chemistry in an inorganic world with only some organic molecules present. Unless an enzyme was also around, nothing would happen. That is why I presented the article about zinc and heat. I'm sure there were scattered areas around the world that would fit that scenario. It is my theory that all of these approaches must be tried over many years, and we are approaching 70 years now, before it is realized there can be no answer known to us. BUT, and I meant A BIG BUT, even if we stumbled on a man-made way to make life, we must consider that perhaps there is more than one way, so we will never be sure what really happened.

Abiogenesis

by David Turell @, Thursday, September 10, 2009, 14:56 (5363 days ago) @ David Turell

The real problem is the starting chemistry in an inorganic world with only some organic molecules present. Unless an enzyme was also around, nothing would happen. That is why I presented the article about zinc and heat. -> BUT, and I meant A BIG BUT, even if we stumbled on a man-made way to make life, we must consider that perhaps there is more than one way, so we will never be sure what really happened.-The biggest problem for Darwinism is the Cambrian Explosion. So much complex life all at once. Life needs oxygen, and the theory has been that lots of oxygen popped up just beforehand. Absolutely right as this article shows:-
http://www.physorg.com/news171722551.html-But another BIG BUT: did oxygen 'allow' an advance that was waiting to happen, or did it 'cause' the advance? No little bitty Darwin steps here.

Abiogenesis

by David Turell @, Tuesday, October 20, 2009, 16:53 (5322 days ago) @ George Jelliss

The latest on abiogenesis
> -Here is a new theory for George using chemiosmosis as the base method. There are enormous suppositions in this article, but the pattern or thought behind this discription reminds me of Robert Shapiro, who suggests a simple inorganic way of providing energy to get the origin of life going. This source of energy is somewhat more organic in quality, but is ubiquitous in life, and could have been there at the beginning.-http://www.newscientist.com/article/mg20427306.200-was-our-oldest-ancestor-a-protonpowered-rock.html?page=1

Abiogenesis

by George Jelliss ⌂ @, Crewe, Sunday, November 15, 2009, 17:41 (5296 days ago) @ George Jelliss

More on abiogenesis, via RD.net:-http://nirmukta.com/2009/11/13/complexity-explained-9-how-did-complex-molecules-like-proteins-and-dna-emerge-spontaneously/-There may not be much new here, but it expresses the process clearly.-Quote: Thus: A facilitates the production of B, and B does the same job for C, and so on. Given enough time, and a large enough pool containing all sorts of molecules, it is quite probable that, at some stage a molecule, say Z, will get formed (aided by catalytic reactions of various types), which would be a catalyst for the formation of the catalyst molecule A we started with.-Once such a loop closes on itself, it would head towards what we now call self-organized criticality (and order). There will be more production of A, which will lead to more production of B, and so on. The plausibility advantage of this scenario visualised by Stuart Kauffman is that there is no need to wait for random reactions for the spontaneous formation of large molecules. And once a threshold has been crossed, the system is likely to inch towards the edge of chaos, and acquire robustness against destabilizing agencies.

--
GPJ

Abiogenesis

by dhw, Tuesday, November 17, 2009, 19:50 (5294 days ago) @ George Jelliss

George has drawn our attention to an article by Dr. Vinod K. Wadhawan explaining the process of autocatalysis, which appears to offer an important contribution to the theory of abiogenesis. I'm in no position to comment on the science, which is way over my head, but for anyone who hasn't read it I'm reproducing the conclusion, which I think offers a clear summary for us non-specialists.-"The probability is next to nil that highly complex molecules like RNA, DNA and proteins got created spontaneously through purely random or chance processes. However, the nearly-impossible became possible, i.e. the unlikely set of events became likely, through the mechanism of autocatalysis. As John Avery has pointed out in his book Information Theory and Evolution (2003), 'A notable feature of autocatalysis (apart from providing a credible mechanism for the origin of life) is that it has the seeds of natural selection at the molecular level: The precursor molecules and the energy-rich molecules are 'food'. And the alternative autocatalytic systems compete for this supply of food. The efficient ones have a better chance of dominating and winning (through faster reproduction). Supply of free energy, of course, was/is the prerequisite for all this to become possible.'
Once a set of autocatalytic reactions had established itself, it went on incrementally evolving into still more complex sets of molecules. Chance events and/or new external conditions resulted in the emergence of a slightly more complex version of, say, one of the molecules in the autocatalytic set. A further round of chemical Darwinism and evolution of a new set of autocatalytic set of molecules followed. And so on, till molecules as complex as RNA, DNA and proteins emerged on the scene, which have life-sustaining and life-propagating properties.
This explanation is an important milestone in our quest for understanding in a rational manner the origin, or origins, of life on Earth. But what is life? I shall address this question in the next article in this series."-"The more we learn about the unbelievably complex, immensely varied, and yet simultaneously simple origin and development of life on earth, the more it looks like a miracle, and one that is still unfolding. The miracle of evolution." Sharon Moalem-Whether our descent from physical materials through physical processes is programmed or not, it's good to be reminded that the scientific "quest for understanding" goes on. Thank you, George, for a timely nudge. The fact that scientists are discovering more and more about these processes is exciting in itself, though I must confess I'm not so keen on Sharon Moalem's oxymoron. I'd be grateful if you would let us know when Dr. Wadhawan's next article appears.

Abiogenesis

by David Turell @, Wednesday, November 18, 2009, 02:03 (5294 days ago) @ dhw


> "The probability is next to nil that highly complex molecules like RNA, DNA and proteins got created spontaneously through purely random or chance processes. However, the nearly-impossible became possible, i.e. the unlikely set of events became likely, through the mechanism of autocatalysis.Supply of free energy, of course, was/is the prerequisite for all this to become possible.'-None of this is wrong, all possible. Autocatalytic molecules are rare.-
> Once a set of autocatalytic reactions had established itself, it went on incrementally evolving into still more complex sets of molecules. > 
> "The more we learn about the unbelievably complex, immensely varied, and yet simultaneously simple origin and development of life on earth, the more it looks like a miracle, and one that is still unfolding. The miracle of evolution." Sharon Moalem-I just 'love' statements as optimistic as "had established itself", positive past tense, conveying 'it must have happened', rather than "extreme faith" that it happened.

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